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Copy-Augmented Representation for Structure Invariant Template-Free Retrosynthesis

Zhuang, Jiaxi, Zhang, Yu, Zhou, Aimin, Qian, Ying

arXiv.org Artificial Intelligence

Retrosynthesis prediction is fundamental to drug discovery and chemical synthesis, requiring the identification of reactants that can produce a target molecule. Current template-free methods struggle to capture the structural invariance inherent in chemical reactions, where substantial molecular scaffolds remain unchanged, leading to unnecessarily large search spaces and reduced prediction accuracy. We introduce C-SMILES, a novel molecular representation that decomposes traditional SMILES into element-token pairs with five special tokens, effectively minimizing editing distance between reactants and products. Building upon this representation, we incorporate a copy-augmented mechanism that dynamically determines whether to generate new tokens or preserve unchanged molecular fragments from the product. Our approach integrates SMILES alignment guidance to enhance attention consistency with ground-truth atom mappings, enabling more chemically coherent predictions. Comprehensive evaluation on USPTO-50K and large-scale USPTO-FULL datasets demonstrates significant improvements: 67.2% top-1 accuracy on USPTO-50K and 50.8% on USPTO-FULL, with 99.9% validity in generated molecules. This work establishes a new paradigm for structure-aware molecular generation with direct applications in computational drug discovery.






Highlighting Named Entities in Input for Auto-Formulation of Optimization Problems

Gangwar, Neeraj, Kani, Nickvash

arXiv.org Artificial Intelligence

While solving mathematical systems is accomplished by analytical software, formulating a problem as a set of mathematical operations has been typically done manually by domain experts. Recent machine learning methods have shown promise in converting textual problem descriptions to corresponding mathematical formulations. This paper presents an approach that converts linear programming word problems into mathematical formulations. We leverage the named entities in the input and augment the input to highlight these entities. Our approach achieves the highest accuracy among all submissions to the NL4Opt Competition, securing first place in the generation track.


Non-Parametric Memory Guidance for Multi-Document Summarization

Baud, Florian, Aussem, Alex

arXiv.org Artificial Intelligence

Multi-document summarization (MDS) is a difficult task in Natural Language Processing, aiming to summarize information from several documents. However, the source documents are often insufficient to obtain a qualitative summary. We propose a retriever-guided model combined with non-parametric memory for summary generation. This model retrieves relevant candidates from a database and then generates the summary considering the candidates with a copy mechanism and the source documents. The retriever is implemented with Approximate Nearest Neighbor Search (ANN) to search large databases. Our method is evaluated on the MultiXScience dataset which includes scientific articles. Finally, we discuss our results and possible directions for future work.


JPAVE: A Generation and Classification-based Model for Joint Product Attribute Prediction and Value Extraction

Deng, Zhongfen, Peng, Hao, Zhang, Tao, Liu, Shuaiqi, Zhao, Wenting, Wang, Yibo, Yu, Philip S.

arXiv.org Artificial Intelligence

Product attribute value extraction is an important task in e-Commerce which can help several downstream applications such as product search and recommendation. Most previous models handle this task using sequence labeling or question answering method which rely on the sequential position information of values in the product text and are vulnerable to data discrepancy between training and testing. This limits their generalization ability to real-world scenario in which each product can have multiple descriptions across various shopping platforms with different composition of text and style. They also have limited zero-shot ability to new values. In this paper, we propose a multi-task learning model with value generation/classification and attribute prediction called JPAVE to predict values without the necessity of position information of values in the text. Furthermore, the copy mechanism in value generator and the value attention module in value classifier help our model address the data discrepancy issue by only focusing on the relevant part of input text and ignoring other information which causes the discrepancy issue such as sentence structure in the text. Besides, two variants of our model are designed for open-world and closed-world scenarios. In addition, copy mechanism introduced in the first variant based on value generation can improve its zero-shot ability for identifying unseen values. Experimental results on a public dataset demonstrate the superiority of our model compared with strong baselines and its generalization ability of predicting new values.